Portfolio item number 1
Published:
Short description of portfolio item number 1
Published:
Short description of portfolio item number 1
Published:
Short description of portfolio item number 2 
Published in Cell Discovery, 2020
Recommended citation: Song, G., Shi, Y., ..., Jin, Z. et al. Global immune characterization of HBV/HCV-related hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression. Cell Discov 6, 90 (2020). https://www.nature.com/articles/s41421-020-00214-5
Published in Nature Communications, 2022
Recommended citation: Jin, Z., Huang, W., Shen, N. et al. Single-cell gene fusion detection by scFusion. Nat Commun 13, 1084 (2022). https://doi.org/10.1038/s41467-022-28661-6 https://www.nature.com/articles/s41467-022-28661-6
Published in Nature Communications, 2023
Recommended citation: Xia, Y., Jin, Z., Zhang, C. et al. TAGET a toolkit for analyzing full-length transcripts from long-read sequencing. Nat Commun 14, 5935 (2023). https://www.nature.com/articles/s41467-023-41649-0
Published in PLoS ONE, 2024
Recommended citation: Sun, B., Guo, J., Jin, H. et al. MetaCONNET A metagenomic polishing tool for long-read assemblies. PLoS ONE 19(12) e0313515 (2024). https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0313515
Published in Cell Reports Methods, 2025
Recommended citation: Wang, X., Jin, Z., Shi, Y., & Xi, R. (2025). Detecting copy-number alterations from single-cell chromatin sequencing data by AtaCNA. Cell Reports Methods. https://www.cell.com/cell-reports-methods/fulltext/S2667-2375(24)00329-1
Published in Genome Biology, 2026
Recommended citation: Jin, Z. et al. scComm: a contrastive learning framework for deciphering cell-cell communications at single-cell resolution. Genome Biology. (2026) https://link.springer.com/article/10.1186/s13059-026-04043-9
Published in Nature Communications, 2026
Recommended citation: Zhang, Z. et al. Spatial-aware detection of copy number alterations from spatial transcriptomics using SpaCNA. Nature Communications. (2026) https://www.nature.com/articles/s41467-026-72284-0
Published:
I introduced my scFusion on the colloquium.
Published:
A talk to students from Lanzhou University
Published:
I introduced scFusion and TAGET. I also shared the experience and struggles in my Ph.D. career.
Published:
第十二届全国生物信息学和系统生物学学术大会的“生物信息学算法”分会场报告
Published:
线粒体生物医学研究所
Published:
第十四届全国生物信息学与系统生物学学术大会,生物信息学算法分会场
Published:
ISCB理事年会,青年PI论坛
Published:
NCCBB2026 分会场报告
Undergraduate course, Health Science Center, Peking University, 2018
Undergraduate course, Guanghua School of Managerment, Peking University, 2018
Undergraduate course, Guanghua School of Managerment, Peking University, 2019
Undergraduate course, Guanghua School of Managerment, Peking University, 2019
My students really loved me and they wrote thanks letters to me.
Undergraduate course, Guanghua School of Managerment, Peking University, 2020
Due to the COVID-19, all students stayed at home and I had to give the online courses to them.
Undergraduate course, Peking University, 2020
Undergraduate course, Peking University, 2021